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Overview

StatusReference proteome
Proteinsi <p>Number of protein entries associated with this proteome: UniProtKB entries for regular proteomes or UniParc entries for redundant proteomes (<a href="/help/proteome_redundancy">more...</a>)</p> 45,179
Gene counti <p>This is the total number of unique genes found in the proteome set, algorithmically computed. For each gene, a single representative protein sequence is chosen from the proteome. Where possible, reviewed (Swiss-Prot) protein sequences are chosen as the representatives.</p> - Download one protein sequence per gene (FASTA)
Proteome IDi <p>The proteome identifier (UPID) is the unique identifier assigned to the set of proteins that constitute the <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a>. It consists of the characters ‘UP’ followed by 9 digits, is stable across releases and can therefore be used to cite a UniProt proteome.<p><a href='/help/proteome_id' target='_top'>More...</a></p>UP000006718
Taxonomy9544 - Macaca mulatta
Strain17573
Last modifiedSeptember 30, 2019
Genome assembly and annotationi <p>Identifier for the genome assembly (<a href="https://www.ensembl.org/Help/Faq?id=216">more...</a>)</p> GCA_000772875.3 from Ensembl

Macaques, genus Macaca are Old World monkeys divided into 22 species. The Rhesus macaque (Macaca mulatta) is widely distributed across Asia and inhabits grasslands, forests, mountains and with greater frequency human urban areas. Adult males average 53cm in height and weigh 8kg; females are smaller and lighter in weight, their body hair is brown or grey but it does not cover the face. Rhesus macaques are very adaptable and are able to live in trees or on the ground. Their diet is mostly herbivorous: fruit, seeds, roots, buds and bark, but with the addition of small insects. They have a strong social group structure with a rich range of vocalizations and gestures for communication.

The current Ensembl genome uses the preliminary assembly Mmul_1 which is melded from the three separate complementary assemblies; as such, it is subject to errors. The genome contains 3.1Gb with 21,905 protein-coding genes and 44,725 predicted transcripts.

Componentsi <p>Genomic components encoding the proteome</p>

Component nameGenome Accession(s)
Proteins
Chromosome 14320
Chromosome 22666
Chromosome 32585
Chromosome 42295
Chromosome 51748
Chromosome 62049
Chromosome 73059
Chromosome 81543
Chromosome 91725
Chromosome 102167
Chromosome 112520
Chromosome 121585
Chromosome 131477
Chromosome 142683
Chromosome 151645
Chromosome 162566
Chromosome 17731
Chromosome 18627
Chromosome 192917
Chromosome 201778
Chromosome X1701
Mitochondrion14
Unplaced
812

Publications

  1. "Molecular analyses of mtDNA deletion mutations in microdissected skeletal muscle fibers from aged rhesus monkeys."
    Gokey N.G., Cao Z., Pak J.W., Lee D., McKiernan S.H., McKenzie D., Weindruch R., Aiken J.M.
    Aging Cell 2004:319-326(2004) [PubMed] [Europe PMC] [Abstract]
  2. "Evolutionary and biomedical insights from the rhesus macaque genome."
    Gibbs R.A., Rogers J., Katze M.G., Bumgarner R., Weinstock G.M., Mardis E.R., Remington K.A., Strausberg R.L., Venter J.C., Wilson R.K., Batzer M.A., Bustamante C.D., Eichler E.E., Hahn M.W., Hardison R.C., Makova K.D., Miller W., Milosavljevic A.
    Zwieg A.S.
    Science 2007:222-234(2007) [PubMed] [Europe PMC] [Abstract]
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